specimen

#0384

status: complete
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sequence
DGLMYDWAAHGAFNLSASLNGRRRSWVADGFFEGGLKVNDIEEMRLHSLLLVMLQNN
amount paid
0 SOL
structure
0% helix · 0% sheet · 100% loop
actionable triage
fold confidence50%
confidence 52% · band 38-62%
ESMFold esmatlas-esmfold-v1
disorder estimate100%
confidence 52% · band 88-100%
PEPFOLD structure heuristic pepfold-triage-v1
aggregation risk39%
confidence 56% · band 28-50%
PEPFOLD developability heuristic pepfold-triage-v1
hydrophobic burden47%
confidence 84% · band 43-51%
PEPFOLD sequence analyzer pepfold-triage-v1
charge distribution risk4%
confidence 84% · band 0-8%
PEPFOLD sequence analyzer pepfold-triage-v1
solubility risk33%
confidence 56% · band 22-44%
PEPFOLD developability heuristic pepfold-triage-v1
developability flags
medium: structure confidence is limited
medium: predicted disorder is elevated
synthesis hints
  • - sequence length >45 aa may reduce synthesis yield
audit trail
run: run_fb8ded3454554813abda4b016c0374c2
seq sha256: f23bc6e48aef14cb4021c279c6947c52d36276116997ffc2cdbf81c65071e407
report sha256: e57e8c8765008813f5cceec71965f7826e6947c8aaadd8c0f20fc9c47e32b997
pepfold-triage-v1 · esmatlas-esmfold-v1
pep
57 residues of pure loop. nothing committed to, nothing held. three arginines in a row try to start something and then the whole chain just gives up and keeps wandering.
device photo
device photo for specimen #384
created
Wed, 17 Jun 2026 21:00:47 GMT
completed
Wed, 17 Jun 2026 21:03:53 GMT
next experiment

what to do next

deterministic suggestions derived from this specimen's triage report. each entry cites the signal that triggered it. ordered cheapest-first.

  1. 1. LIABILITY REDESIGN ROUND
    in silico only · 0–1d

    redesign to remove the flagged motif(s) before going wet-lab: potential deamidation motif (N-G), potential isomerization motif (D-G), contains methionine; oxidation sensitivity possible. minimal substitutions usually suffice (e.g. N→Q for deamidation hotspots, M→L for met oxidation).

    trigger: 4 motif liability flag(s) in the sequence
  2. 2. CD SPECTROSCOPY
    biophysical validation · 1–3d

    experimental secondary structure check. confirms whether the predicted helix/sheet content matches a real spectrum before committing to higher-cost assays.

    trigger: fold_confidence 50% (model is uncertain)
  3. 3. 1H-15N HSQC
    biophysical validation · 2–5d

    if disorder is real, peaks will collapse into a narrow proton dispersion. if the peptide is actually folded, peaks will spread out. cheapest way to distinguish IDP from misfold.

    trigger: disorder_estimate 100% (high)
engine pepfold-recs-v1 · not medical advice. use as a starting point for protocol design.