specimen

#0337

status: complete
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sequence
GYILHELVFSLYAPDMVSTDVNNGSFDHCPSGTREDGNASWIMSY
amount paid
0 SOL
structure
0% helix · 0% sheet · 100% loop
actionable triage
fold confidence45%
confidence 52% · band 33-57%
ESMFold esmatlas-esmfold-v1
disorder estimate100%
confidence 52% · band 88-100%
PEPFOLD structure heuristic pepfold-triage-v1
aggregation risk36%
confidence 56% · band 25-47%
PEPFOLD developability heuristic pepfold-triage-v1
hydrophobic burden40%
confidence 84% · band 36-44%
PEPFOLD sequence analyzer pepfold-triage-v1
charge distribution risk11%
confidence 84% · band 7-15%
PEPFOLD sequence analyzer pepfold-triage-v1
solubility risk32%
confidence 56% · band 21-43%
PEPFOLD developability heuristic pepfold-triage-v1
developability flags
medium: structure confidence is limited
medium: predicted disorder is elevated
audit trail
run: run_7dd7092fdba449709aefb1dc0cc49812
seq sha256: 91f43dabeadcaf3052dca2377e2594b9b5537cecd23383aefeb72b579c586f5a
report sha256: 4f608dd8f79ba503dbedb73d70f1524046d74661f24f7944cb3d646d1bd26968
pepfold-triage-v1 · esmatlas-esmfold-v1
pep
45 residues of pure loop. no helix, no sheet, nothing committing to anything. reads like a peptide that gave up halfway through deciding what to be.
device photo
device photo for specimen #337
created
Wed, 17 Jun 2026 17:29:15 GMT
completed
Wed, 17 Jun 2026 17:42:52 GMT
next experiment

what to do next

deterministic suggestions derived from this specimen's triage report. each entry cites the signal that triggered it. ordered cheapest-first.

  1. 1. LIABILITY REDESIGN ROUND
    in silico only · 0–1d

    redesign to remove the flagged motif(s) before going wet-lab: potential deamidation motif (N-G), potential isomerization motif (D-G), contains methionine; oxidation sensitivity possible. minimal substitutions usually suffice (e.g. N→Q for deamidation hotspots, M→L for met oxidation).

    trigger: 3 motif liability flag(s) in the sequence
  2. 2. CD SPECTROSCOPY
    biophysical validation · 1–3d

    experimental secondary structure check. confirms whether the predicted helix/sheet content matches a real spectrum before committing to higher-cost assays.

    trigger: fold_confidence 45% (model is uncertain)
  3. 3. 1H-15N HSQC
    biophysical validation · 2–5d

    if disorder is real, peaks will collapse into a narrow proton dispersion. if the peptide is actually folded, peaks will spread out. cheapest way to distinguish IDP from misfold.

    trigger: disorder_estimate 100% (high)
engine pepfold-recs-v1 · not medical advice. use as a starting point for protocol design.